Commands

List Genome References

karaf@hearsay()> list-genome-references 
ID         Name
1          GRCh37
88         GRCh37.p10
132        GRCh37.p11
202        GRCh37.p12
246        GRCh37.p13
2          GRCh37.p2
13         GRCh37.p5
62         GRCh37.p9
279        GRCh38
311        GRCh38.p1
347        GRCh38.p2
376        GRCh38.p3
423        GRCh38.p4
	

List Genes

karaf@hearsay()> list-genes | grep BRCA1
11249      BABAM1           BRISC and BRCA1 A complex member 1
6531       BAP1             BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
488        BARD1            BRCA1 associated RING domain 1
6532       BRAP             BRCA1 associated protein
20240      BRAT1            BRCA1-associated ATM activator 1
566        BRCA1            breast cancer 1, early onset
24046      BRCA1P1          BRCA1 pseudogene 1
14713      BRCC3            BRCA1/BRCA2-containing complex, subunit 3
36103      BRCC3P1          BRCA1/BRCA2-containing complex, subunit 3 pseudogene 1
15891      BRIP1            BRCA1 interacting protein C-terminal helicase 1
3322       NBR1             neighbor of BRCA1 gene 1
8096       NBR2             neighbor of BRCA1 gene 2 (non-protein coding)